Does this undermine the concept of freedom of religion in Islam?

"Allah 's Apostle said, " I have been ordered to fight with the people till they say, 'None has the right to be worshipped but Allah,' ...."

http://www.usc.edu/dept/MSA/fundamentals/hadithsunnah/bukhari/052.sbt.html#004.052.196

Also, how can Islam claim to promote freedom of religion while killing apostates, while denying Dhimmis all basic rights by denying them access to the court to defend any 'nominal rights' they have, while treating other non-Muslim groups even worse, while forbidding the construction of churches and synagogues, while forcing Dhimmis into a condition of humiliation, segregation and discrimination etc?